Journal Paper
-
"AI-driven covalent drug design strategies targeting main protease (m pro ) against SARS-CoV-2: structural insights and molecular mechanisms"
Mohammad Hossein Haghir Ebrahimabadi,
Abdurahman Ghasemlo,
Fatemeh Bayani,
Yahya Sefidbakht,
Massoud Vosough,
Sina Mozaffari-Jovin,
Vladimir N. Uversky
JOURNAL OF BIOMOLECULAR STRUCTURE and DYNAMICS,
Vol. _,
pp.1-29,
2024
-
"Characterization of stability, safety and immunogenicity of the mRNA lipid nanoparticle vaccine Iribovax® against COVID-19 in nonhuman primates"
Parvin Zamani,
Mohammad Mashreghi,
Mahere Rezazade Bazaz,
Selma Zargari,
Farzaneh Alizadeh,
Mahyar Dorrigiv,
Asghar Abdoli,
Hossein Aminianfar,
Mahdi Hatamipour,
Javad Zarqi,
Saeed Behboodifar,
Yalda Samsami,
Saeideh Khorshid Sokhangouy,
Yahya Sefidbakht,
Vuk Uskokovic,
Seyed Mahdi Rezayat,
Mahmoud Reza Jaafari,
Sina Mozaffari-Jovin
JOURNAL OF CONTROLLED RELEASE,
Vol. 360,
pp.316-334,
2023
-
"An overview of the vaccine platforms to combat COVID-19 with a focus on the subunit vaccines"
Fatemeh Bayani,
Negin Safaei Hashkavaei,
Sareh Arjmand,
SHOKOUH REZAEI,
Vuk Uskokovic,
Mahdi Alijanianzadeh,
Vladimir N. Uversky,
Seyyed Omid Ranaee Siadat,
Sina Mozaffari-Jovin,
Yahya Sefidbakht
PROGRESS IN BIOPHYSICS and MOLECULAR BIOLOGY,
Vol. 178,
pp.32-49,
2023
-
"In silico design of a multi-epitope vaccine against the spike and the nucleocapsid proteins of the Omicron variant of SARS-CoV-2"
Fatemeh Bayani,
Negin Safaei Hashkavaei,
Mohammad Reza Karamian,
Vuk Uskokovich,
Yahya Sefidbakht
JOURNAL OF BIOMOLECULAR STRUCTURE and DYNAMICS,
Vol. 41,
pp.1-15,
2023
-
"Exploration of potential inhibitors for SARS?CoV?2 Mpro considering its mutants via structure?based drug design, molecular docking, MD simulations, MM/PBSA, and DFT calculations"
Abdurahman Ghasemlo,
Vuk Uskokovi?,
Yahya Sefidbakht
BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY,
Vol. 69,
pp.1-19,
2022
-
"Insights into the structural peculiarities of the N-terminal and receptor binding domains of the spike protein from the SARS-CoV-2 Omicron variant"
Fatemeh Bayani,
Negin Safaei Hashkavaei,
Vladimir N. Uversky,
Sina Mozaffari-Jovin,
Yahya Sefidbakht
COMPUTERS IN BIOLOGY AND MEDICINE,
Vol. 147,
2022
-
"Doxorubicin-loaded, pH-sensitive Albumin Nanoparticles for Lung Cancer Cell Targeting"
Ahmedazeezahmed Alakdha,
Yahya Sefidbakht,
SHOKOUH REZAEI,
Hasan Kouchakzadeh,
Vuk Uskokovi?
JOURNAL OF PHARMACEUTICAL SCIENCES,
Vol. .,
pp.1-11,
2021
-
"Development and characterization of a thermostable GH11/GH10 xylan degrading chimeric enzyme"
,
Fataneh Fatemi,
Yahya Sefidbakht,
Seyed Ehsan Ranaei Siadat
ENZYME AND MICROBIAL TECHNOLOGY,
Vol. 149,
2021
-
"Tracking the pipeline: immunoinformatics and the COVID-19 vaccine design"
SHOKOUH REZAEI,
Yahya Sefidbakht,
Vuk Uskokovi?
BRIEFINGS IN BIOINFORMATICS,
Vol. 22,
pp.1-20,
2021
-
"Radioprotective Role of Vitamins C and E against the Gamma Ray-Induced Damage to the Chemical Structure of Bovine Serum Albumin"
Hajar Zarei,
Mostean Bahreinipour,
Yahya Sefidbakht,
SHOKOUH REZAEI,
Rouhollah Gheisari,
Susan Kabudanian Ardestani,
Vuk Uskokovi,
Hiroshi Watabe
Antioxidants,
Vol. 10,
2021
-
"Colloidal graphene oxide enhances the activity of a lipase and protects it from oxidative damage: Insights from physicochemical and molecular dynamics investigations"
Omid Kalji Karaci,
Yahya Sefidbakht,
Alexey M. Nesterenko,
Vuk Uskokovi,
Seyyed Omid Ranaee Siadat
JOURNAL OF COLLOID AND INTERFACE SCIENCE,
Vol. 567,
pp.285-299,
2020
-
"Graphite/gold nanoparticles electrode for direct protein attachment: characterization and gas sensing application"
Javad Shabani Shayeh,
Yahya Sefidbakht,
Meisam Omidi,
Fatemeh Yazdian,
Lobat Tayebi
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH,
Vol. 27,
pp.1-10,
2020
-
"Enantioseparation of mandelic acid on vancomycincolumn: Experimental and docking study"
Mostafa Shahnani,
Yahya Sefidbakht,
Shokoofe Maghari,
Ahmad Mehdi,
Hassan Rezadoost Chahardeh,
Alireza Ghassempour
CHIRALITY,
Vol. 32,
pp.1289-1298,
2020
-
"Comparative molecular dynamics study of the receptor-binding domains in SARS-CoV-2 and SARS-CoV and the effects of mutations on the binding affinity"
SHOKOUH REZAEI,
Yahya Sefidbakht,
Vuk Uskokovic
JOURNAL OF BIOMOLECULAR STRUCTURE and DYNAMICS,
Vol. 38,
pp.1-20,
2020
-
"Hydroxyapatite as a biomaterial - a gift that keeps on giving"
Behrad Ghiasi,
Yahya Sefidbakht,
Sina Mozaffari-Jovin,
Behnaz Gharehcheloo,
Mehrnoush Mehrarya,
Arash Khodadadi,
Maryam Rezaei,
Seyyed Omid Ranaee Siadat,
Vuk Uskokovi?
DRUG DEVELOPMENT AND INDUSTRIAL PHARMACY,
Vol. 46,
pp.1035-1062,
2020
-
"How is the Effect of Silver Nanoparticles and Lipase/Cellulase Enzymes on Each Other?"
Behnam Eysazadehjandar,
Fateme Mirzajani,
Yahya Sefidbakht
Iranian Journal of Science and Technology Transaction A-Science,
Vol. 44,
pp.27-35,
2020
-
"Theranostic applications of stimulus-responsivesystems based on carbon dots"
Behrad Ghiasi,
Golnaz Mehdipour,
Nooshin Safari,
Hamidreza Behboodi,
Mohadeseh Hashemi,
Meisam Omidi,
Yahya Sefidbakht,
Amir Yadegari,
Michael R. Hamblin
INTERNATIONAL JOURNAL OF POLYMERIC MATERIALS,
Vol. 70,
pp.117-130,
2019
-
"Effect of size and chemical composition of graphene oxide nanoparticles on optical absorption cross-section"
Mohadeseh Hashemi,
Bharadwaj Muralidharan,
Meisam Omidi,
Javad Mohammadi,
Yahya Sefidbakht,
Eun Song Kima,
Hugh D.C. Smyth,
Mohammad Shalbaf,
Thomas E. Milner
JOURNAL OF BIOMEDICAL OPTICS,
Vol. 23,
2018
-
"An isolate of Potato Virus X capsid protein from N. benthamiana Insights from homology modeling and molecular dynamics simulation"
Neda Esfandiari,
Yahya Sefidbakht
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES,
Vol. 116,
pp.939-946,
2018
-
"The effect of non-thermal atmospheric plasma on the production and activity of recombinant phytase enzyme"
Mahsa Farasat,
Sareh Arjmand,
Seyyed Omid Ranaee Siadat,
Yahya Sefidbakht,
Hamidreza Ghomi marzdashti
Scientific Reports,
Vol. 8,
pp.1-12,
2018
-
"Continuous fast Fourier transforms cyclic Voltammetry as a new approach for investigation of skim milk k-casein proteolysis a comparative study"
Javad Shabani Shayeh,
Yahya Sefidbakht,
Seyyed Omid Ranaee Siadat,
kaveh niknam
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES,
Vol. 103,
pp.972-977,
2017
-
"Recombinant Acetylcholinesterase purification and its interaction with silver nanoparticle"
Fateme Mirzajani,
Seyed Mohammad Motavalli,
Shaghayegh Jabbari,
Seyyed Omid Ranaee Siadat,
Yahya Sefidbakht
PROTEIN EXPRESSION AND PURIFICATION,
Vol. 136,
pp.58-65,
2017
-
"Homology Modeling and Molecular Dynamics Study on Schwanniomyces Occidentalis Alpha Amylase"
Yahya Sefidbakht,
Seyyed Omid Ranaee Siadat,
JOURNAL OF BIOMOLECULAR STRUCTURE and DYNAMICS,
Vol. 35,
pp.1-11,
2016
-
"Caseoperoxidase mixed -casein SDS hemin imidazole complex a nano artificial enzyme"
Zainab Moosavi-Movahedi,
Hussein Gharibi,
Hamid Hadi-Alijanvand,
Mohammad Akbarzadeh,
Mansoore Esmaili,
Maliheh S. Atri,
Yahya Sefidbakht,
Mousa Bohlooli,
Khodadad Nazari,
Sohaeila javadian,
Jun Hong,
Ali A. Saboury,
Nader Sheibani,
Ali A. Moosavi-Movahedi
JOURNAL OF BIOMOLECULAR STRUCTURE and DYNAMICS,
Vol. 33,
pp.1-46,
2015
-
"Antibacterial and molecular dynamics study of the Dolabellanin B2 isolated from sea slug Peronia peronii"
,
Seyyed Omid Ranaee Siadat,
Jamileh Pazooki,
Yahya Sefidbakht
BIOSCIENCES BIOTECHNOLOGY RESEARCH ASIA,
Vol. 12,
pp.2023-2035,
2015
-
"Chemical recycling of PET wastes with different Catalysts"
,
,
Yahya Sefidbakht,
خديجه شكوهي,
International Journal of Polymer Science,
Vol. 2015,
pp.1-11,
2015
-
"Enhancement of thermal stability of saccharomyces cerevisiae recombinant invertase by site directed mutagenesis"
Sareh Arjmand,
Ghobadi Leila ,
Seyyed Omid Ranaee Siadat,
Yahya Sefidbakht,
Fatemeh Farzaneh
Biotechnology Tarbiat Modares University,
-
""
Sareh Arjmand,
Yahya Sefidbakht,
Seyyed Omid Ranaee Siadat
-
""
Yahya Sefidbakht,
Sheyda Zarghami,
Vol. 13,
pp.124-133,
2023
-
"the history of insulins discovery and its use in diabetes managment"
Negin Safaei Hashkavaei,
Fatemeh Bayani,
Narges Parniaei,
Sareh Arjmand,
Yahya Sefidbakht
Vol. 13,
pp.60-69,
2023
-
""
Samira Abdikhni,
SHOKOUH REZAEI,
Yahya Sefidbakht,
Sareh Arjmand
Vol. 11,
pp.189-199,
2021
-
""
SHOKOUH REZAEI,
Yahya Sefidbakht,
Maedeh Soltani,
Narges Tavana
Vol. 11,
pp.59-68,
2021
-
"New Coronavirus 2019 (nCoV-2019) Origin and Pathogenicity Mechanism"
SHOKOUH REZAEI,
Abdurahman Ghasemlo,
Yahya Sefidbakht
Vol. 10,
pp.130-137,
2020
-
""
Samin Haghighi poodeh,
Yahya Sefidbakht,
Hasan Kouchakzadeh
Vol. 9,
pp.82-88,
2019
-
""
Fatemeh Ghafouri,
Nasim Kian vala,
Samin Haghighi poodeh,
Yahya Sefidbakht
Vol. 10,
pp.33-41,
2019
-
""
Ali Ghorbani,
Arian Zamani dehkordi,
Yahya Sefidbakht
Vol. 8,
pp.128-134,
2018
-
""
Yahya Sefidbakht,
amir hosein haghighi,
mostafa ghorbani
Vol. 15,
pp.35-47,
2016
-
""
Yahya Sefidbakht
Vol. 5,
pp.71-76,
2015
-
""
Yahya Sefidbakht
Vol. 6,
pp.81-86,
2015
-
""
Yahya Sefidbakht
Vol. 5,
pp.49-55,
2014
Conference Paper
-
"Integrating Experimental and Molecular Dynamics Approaches to Investigate Stem Cell Exosomes and Their Therapeutic Potential in drug delivery"
Yahya Sefidbakht
6th International Congress and 18th Iranian Genetics Congress,
pp.1375-1376,
2024
-
"Identification of potential COVID-19 Mpro inhibitors through covalent drug docking, molecular dynamics simulation, and MMGBSA calculation"
Mohammad Hossein Haghir Ebrahimabadi,
Fatemeh Bayani,
Yahya Sefidbakht
Iran's 5th Conference on Protein and Peptide Science,
2024
-
"Nanobody interactions with SARS-CoV-2 variants: Insights from computational studies on spike protein receptor binding domain mutations"
Yahya Sefidbakht,
Fatemeh Bayani
Iran's 5th Conference on Protein and Peptide Science,
2024
-
"Stem cell-derived exosomes in deliveringAnti-cancer drugs Doxorubicin and Cyclophosphamide,cell viability and membrane simulation studies"
Yahya Sefidbakht,
Vosugh Massoud,
Farnaz Maghami
The First International Congress of Cancer Genomics,
2023
-
"study of the receptor-binding domains in SARS-CoV-2 and SARS-CoV and the effects of mutations on the binding affinity , biophysical aspects"
Yahya Sefidbakht
International virtual conference on Biophysics of life on Earth and the Covid-19 pandemic (World Biophysics Week 2021),
2021
-
"lipase adsorption on graphene oxide insights from molecular dynamics investigations"
Omid Kalji Karaci,
Yahya Sefidbakht,
alexey nesterenko
the 3rd conference on protein and peptide sciences,
2018
-
"Experimental and theoretical investigation on mandelic acid (rs) enantioselective separation using vancomycin chiral column"
Yahya Sefidbakht,
Mostafa Shahnani,
Hassan Rezadoost Chahardeh,
Alireza Ghassempour
the 1st International Congress on Biomedicine,
2017
-
"Lipase adsorbtion on the single layer geraphene oxide"
Yahya Sefidbakht,
Omid Kalji Karaci
the 1st International Congress on Biomedicine,
2017
-
"The effect of cold argon plasma on lipase activity"
Yahya Sefidbakht,
Omid Kalji Karaci,
Sareh Arjmand,
Mahsa Farasat,
Seyyed Omid Ranaee Siadat,
Hamidreza Ghomi marzdashti
the 1st International Congress on Biomedicine,
2017
-
"Graphene oxide reduce pathologies damages by Hydrogene peroxide"
Omid Kalji Karaci,
Yahya Sefidbakht
Second Nanomedicine and Nanosafety Conference,
2017
-
"Physically adsorbed lipase on Graphene oxide as a reusable biocatalyst"
Yahya Sefidbakht,
Omid Kalji Karaci
Second Nanomedicine and Nanosafety Conference,
pp.332-332,
2017
-
""
Yahya Sefidbakht,
Seyyed Omid Ranaee Siadat,
,
2016
-
"Poly Ethylene Terephthalate (PET) Waste Management through chemical and biocatalysts"
Yahya Sefidbakht,
Amir Hossein Haghighi,
Mohammad Khonkari,
Javad Shabani Shayeh
,
2016
-
""
Yahya Sefidbakht,
Seyyed Omid Ranaee Siadat,
,
2015
-
""
Seyyed Omid Ranaee Siadat,
Yahya Sefidbakht
,
2015
-
"computational investigation of the effect of omicron mutations in the N-terminal domain of spike protein on antibody evasion"
Fatemeh Bayani,
Negin Safaei Hashkavaei,
Yahya Sefidbakht
17th National and 2nd International Conference of Iranian Biophysical Chemistry 6-7 Sep, 2022 University of Guilan,
2022
-
"molecular dynamics simulation of receptor-binding domain in wuhan and omicron(B.1.1529) varaiant of SARS-COV-2"
Negin Safaei Hashkavaei,
Fatemeh Bayani,
Yahya Sefidbakht
17th National and 2nd International Conference of Iranian Biophysical Chemistry 6-7 Sep, 2022 University of Guilan,
2022
-
"investigatigating spike protein N-terminal domain mutations in antibody evasion by molecular dyanmics simulation and designing a multi-epitope-based peptide vaccine against omicron variant (BA.1) proteins"
Fatemeh Bayani,
Negin Safaei Hashkavaei,
Yahya Sefidbakht
17th National Congress of Biochemistry and 8th International Congress of Biochemistry and Molecular Biology,
2022
-
"comparison of molecular dynamics study of receptor-binding domain in wild type and omicron (B1.1529) variants of SARS-COV-2"
Negin Safaei Hashkavaei,
Fatemeh Bayani,
Yahya Sefidbakht
The 10th National Bioinformatics and first international conference of Iran,
2022
-
"Molecular dynamics simulations show structural insights into the N-terminal domain mutations of the spike protein in"
Fatemeh Bayani,
Negin Safaei Hashkavaei,
Yahya Sefidbakht
The 10th National Bioinformatics and first international conference of Iran,
2022
-
"Comparative molecular dynamics study of receptor-binding domains in wild type and Omicron (B.1.1.529) variant of SARS-CoV-2"
Negin Safaei Hashkavaei,
Fatemeh Bayani,
Yahya Sefidbakht
The 10th National Bioinformatics and first international conference of Iran,
2022
-
"molecular dynamics (md) simulation of receptor binding domain of coronaviruses"
SHOKOUH REZAEI,
Yahya Sefidbakht
ninth iranian conference on on bioinformatics,
2020
-
"the effect of hydroxyappatite nanoparticle on the activity of thermomyces lanuginosa lipase"
Behrad Ghiasi,
Yahya Sefidbakht,
Arian Zamani dehkordi,
Ali Ghorbani,
Seyyed Omid Ranaee Siadat
4th internation student biotechnology congress,
2019
-
"the facile and low temperature synthesis of antibacterial silver doped hydroxyapatite by wet chemistry"
Behrad Ghiasi,
Yahya Sefidbakht
4th internation student biotechnology congress,
2019
-
"Effect of Atmospheric pressure plasma on phytase activity"
Mahsa Farasat,
Sareh Arjmand,
Seyyed Omid Ranaee Siadat,
Hamidreza Ghomi marzdashti,
Yahya Sefidbakht
,
2018
-
"Geraphene oxide (GO) modulates the activity of Thermomyceslanuginosus lipase (TLL)"
Omid Kalji Karaci,
Yahya Sefidbakht
14th conference on Biophysical chemistry,
2016
-
""
Fatemeh Moeinoddini,
Seyyed Omid Ranaee Siadat,
Yahya Sefidbakht
International congress of Agricultural sciences food and Environment,
2016
-
"Sustainability Aspects of Iran s Milk and Dairy Industry"
Fatemeh Moeinoddini,
Seyyed Omid Ranaee Siadat,
Yahya Sefidbakht
International congress of Agricultural sciences food and Environment,
2016